Brett Metcalfe
Postdoctoral Researcher Laboratory of Systems and Synthetic Biology at Wageningen University & Research (WUR) working on Digital Twins, Data Fabrics, and research data management.
URL
SEEK ID: https://hub.ibisba.eu/people/185
Location:
Netherlands
ORCID:
https://orcid.org/0000-0002-5873-9815
Joined: 17th Nov 2023
Expertise: Data Management, Metadata, Mathematical Modelling, Software Engineering, machine learning
Tools: Matlab, Python, Metadata, machine learning, Mass spectrometry, Microscopy
Roles
Admin
Project administrator
- Industrial-scale penicillin simulation
- Sandbox
- Bioindustry4.0 Work Package 7: Tools for high-quality datasets, requisite for data-driven methods and services
- IBISBA-DIALS WP3
- BIOREM
- Hybrid Physics-Informed Neural Networks for Efficient Computational Modeling: A Workflow Framework Applied to Schwanniomyces occidentalis
- Pseudomonas putida use case
- STAMM: Soft sensor moniToring and mAintenance framework for Machine learning Models
- Bioindustry4.0 Public dissemination
- Data Fabric Usage Demos
- raw2ready
- DBTLHub
Programme administrator
- Bioindustry 4.0
- IBISBA-DIALS
- Horizon Europe – the Framework Programme for Research and Innovation (2021 to 2027)
- IBISBA-ERIC
- Horizon 2020 - the Framework Programme for Research and Innovation (2014-2020)
- Seventh framework programme of the European Community for research and technological development and demonstration activities (2007-2013)
- ELIXIR
Their tagsRelated items
ELIXIR is an intergovernmental organisation that brings together life science resources from across Europe. These resources include databases, software tools, training materials, cloud storage and supercomputers. The goal of ELIXIR is to coordinate these resources so that they form a single infrastructure. This infrastructure makes it easier for scientists to find and share data, exchange expertise, and agree on best practices. Ultimately, it will help them gain new insights into how living ...
Projects: DBTLHub
Web page: https://elixir-europe.org/
The Seventh Framework Programme aimed to enhance industrial competitiveness and promote excellence in scientific and technological research in Europe. It consisted of four main areas: Cooperation, Ideas, People, and Capacities, which supported various thematic areas related to research and technology while also strengthening human potential in research and technology.
Projects: Biocommodity refinery
The objectives of Horizon 2020 were to strengthen the EU's scientific and technological foundations, create a European Research Area with free circulation of researchers and knowledge, and drive the EU towards a knowledge society and competitive economy. Specific goals included implementing research, technological development, and innovation; promoting international cooperation; disseminating and optimizing research results; stimulating training and mobility; fostering better exploitation of ...
Projects: Not specified
IBISBA is designed to accelerate end-to-end bioprocess development, linking best-in-class R&D facilities to provide seamless multi-technology services.
Focusing on the different R&D phases in bioprocess development, IBISBA offers services related to computer-assisted design of biocomponents, construction of enzymes and microbial strains, the fermentation, downstream processing and project knowledge asset management.
Projects: Uncurated Protocols Library, Template library, Muconic Acid Production in Yeast, Public announcements and documents, IBISBA Library, Curated Protocols Library, DBTL-P, Sandbox, kHub_Test_2024, PREP-IBISBA, ITINERIS-IBBR-NA, DIALS - Delivering the Infrastructure As a Legal Structure
Web page: http://www.ibisba.eu
Bioindustry4.0 Work Package 7: Tools for high-quality datasets, requisite for data-driven methods and services
Real-time online monitoring of bioprocesses
Industrial biotechnology (IB) has the potential to create new markets while protecting the environment. With this in mind, the EU-funded BIOINDUSTRY 4.0 project will pave the way for IB to become a major manufacturing technology. Supporting the digitalisation of IB, the project will create new services delivered by European research ...
Programme: Bioindustry 4.0
Public web page: https://www.bioindustry4.eu/
Start date: 1st Jan 2023
End date: 31st Dec 2026
Use case of Pseudomonas putida
Programme: Bioindustry 4.0
Public web page: https://www.bioindustry4.eu/
Start date: 1st Feb 2023
End date: 31st Dec 2026
Real-time online monitoring of bioprocesses
Industrial biotechnology (IB) has the potential to create new markets while protecting the environment. With this in mind, the EU-funded BIOINDUSTRY 4.0 project will pave the way for IB to become a major manufacturing technology. Supporting the digitalisation of IB, the project will create new services delivered by European research infrastructure. These will address several challenges, focusing on the acceleration of bioprocess development pipelines. ...
Programme: Bioindustry 4.0
Public web page: https://www.bioindustry4.eu/
Start date: 1st Jan 2023
End date: 31st Dec 2026
Artificial intelligence (AI) and machine learning (ML) models as well as Digital shadows and Digital twins as well as Digital shadows and Digital twins have been, and are being, developed for a variety of applications, including industrial process supervision, bioprocess optimization, energy management, and environmental monitoring. In cases where models have the aim to classify, predict, or forecast a variable of interest then these models must become deployable in real-time so that their ...
Programme: Bioindustry 4.0
Public web page: https://stamm.inrae.fr
ROR ID: https://ror.org/04qw24q55
Department: Not specified
Country: Netherlands
City: Wageningen
Web page: https://www.wur.nl/
Abstract (Expand)
Authors: Brett Metcalfe, Juan Camilo Acosta-Pavas, Carlos Eduardo Robles-Rodriguez, George K. Georgakilas, Theodore Dalamagas, Cesar Arturo Aceves-Lara, Fayza Daboussi, Jasper J Koehorst, David Camilo Corrales
Date Published: 1st Mar 2025
Publication Type: Journal
Abstract (Expand)
Authors: Juan Camilo Acosta-Pavas, Carlos Eduardo Robles-Rodriguez, David Griol, Fayza Daboussi, Cesar Arturo Aceves-Lara, David Camilo Corrales
Date Published: 1st Aug 2024
Publication Type: Journal
Abstract (Expand)
Editor:
Date Published: 2024
Publication Type: Journal
The IBISBA Knowledge Hub (IBISBAKHub) is a data management platform designed to help researchers enhance the management of their research data. It offers an improved way to share, register, and organize the data and assets generated from research projects. The IBISBAKHub’s primary objective is to promote the adoption and implementation of FAIR Data principles.
IBISBA DIALS - Funded by the European Union (Grant agreement N°101131085). Views and opinions expressed are however those of the author(s) ...
Creator: Munazah Andrabi
Submitter: Brett Metcalfe
The IBISBA Knowledge Hub (IBISBAKHub) is a data management platform designed to help researchers enhance the management of their research data. It offers an improved way to share, register, and organize the data and assets generated from research projects. The IBISBAKHub’s primary objective is to promote the adoption and implementation of FAIR Data principles.
IBISBA DIALS - Funded by the European Union (Grant agreement N°101131085). Views and opinions expressed are however those of the author(s) ...
Creator: Jasper Koehorst
Submitter: Brett Metcalfe
The stakeholder workshop on IoT: Data integration from the lab took place on October 23rd, 2025 from 10:00-12:00 (CET). This two-hour workshop brought together experts and stakeholders to explore how laboratory data can be better integrated, managed, and applied using Internet of Things (IoT) technologies. The purpose of this event was to foster dialogue on the opportunities but also the challenges of IoT data acquisition within laboratory environments, exploring how connected equipment and sensors ...
Start Date: 23rd Oct 2025 (23rd Oct 2025 (Europe/Amsterdam))
End Date: 23rd Oct 2025 (23rd Oct 2025 (Europe/Amsterdam))
Event Website: https://www.bioindustry4.eu/
Country: Not specified
City: Not specified
Poster entitled 'The Lightweight Equipment Adapter Framework (LEAF) for real-time data acquisition' presented in the 'Computational challenges in the Life Sciences' track of NWO ICT.OPEN2026.
Creators: Brett Metcalfe, Jasper Koehorst
Submitter: Brett Metcalfe
Download
Data Management Plan of BIOINDUSTRY 4.0
As part of Task 7.1 “A Data and Metadata Fabric to support DTs” of Work Package (WP) 7 a Data Management Plan (DMP) is to be generated (Deliverable 7.1). This deliverable is intended to address the request by the European Commission to establish a plan regarding ‘data’ generated during the BIOINDUSTRY 4.0 programme. More explicitly, how data will be described (metadata, standards, etc.), shared, utilised, stored, and archived. This living document ...
Creators: Brett Metcalfe, Jasper Koehorst
Submitter: Brett Metcalfe
